Tools to read and plot outputs from Stock Synthesis.


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Documentation for package ‘sstools’ version 2.0

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A B C D E F G I K L M N O P Q R S T U V W Y

sstools-package Functions to read and plot results of SS.
sstools.try-package What the package does (short line) ~~ package title ~~

-- A --

allplot.ss allplot.ss
allplot.ss Title
areadef.default Title

-- B --

Beverton.holt Title
Beverton.holt.ss2 Title
bind.list Title
bind.list2 Title
bindmat Title
bindmat2 Title
branov.eq Title
branov.eq.pre Title
branov.eq.pre2 Title
branov.eq.pre3 Title

-- C --

calc.B0 Title
calc.moon.age Title
calc.pcaa Title
calc.pcaa.tmp Title
calc.total.catch Title
calFAA.ss Title
calFAA.ss2 Title
calTotcatch.ALK Title
calTotcatch.select Title
constsmp Title
cor.dot Title
count.next.line Title
count.next.line2 Title
custamize.LLrep Title
cutlimit Title

-- D --

do.bootstrap.ss3 Title
doautorun Title
doss3 Title

-- E --

ex.mat Title
ex.mat2 Title
expand.category Title
expand.category0 Title

-- F --

file.copy2 Title
find.and.read.table Title
find.and.read.table0 Title
find.and.read.table2 Title
find.and.read.table3 Title

-- G --

geomean Title
get.tablename Title
getAgecomp.ss Title
getAgecomp.ss.1 Title
getAgecomp.ss.2 Title
getAgecomp.ss2 Title
getAgecomp.ss2.1 Title
getAgecomp.ss2.2 Title
getALK.ss Title
getALK.ss2 Title
getBabs.ss Title
getBabs.ss2 Title
getCAA.ss Title
getCAA.ss2 Title
getCPUE.ss Title
getCPUE.ss2 Title
getEffsmp1 Title
getEffsmp2 Title
getNAA.ss Title
getNAA.ss2 Title
getNMA.ss Title
getNMA.ss2 Title
getSelect.ss Title
getSelect.ss2 Title
getSPR.ss Title
getSPR.ss2 Title
getSRfunc.ss Title
getSRfunc.ss2 Title
getSRpara.ss Title
getSRpara.ss2 Title
getWatL.ss Title
getWatL.ss2 Title
getx Title
gety Title
good.colors Title

-- I --

int.dec Title
inv.logit Title
is.ss2.2 Title
is.ss3 Title

-- K --

kai07 Title
kai07inv Title

-- L --

lengthdist Title
Lflattop Title
Llogistic Title

-- M --

make.partcatcharg Title
make.pictexfig Title
make.pointmap Title
makedevice Title
matplot2 Title
matslice Title
mod2 Title
month2days Title
more.ss3.11 Title
moving.mean Title
mvfile Title

-- N --

noninv.logit Title
nplot Title

-- O --

open.histdata Title
overplot.graph Title

-- P --

paste.new Title
paste2 Title
pictex.template Title
plot.cohortSSB Title
plot.data.frame Title
plot.nofishBio Title
plot.processgraph Title
plot.snail Title
plotBSR Title
plotFvalue2 Title
plotlength.fit Title
plotSelect Title
plotSRcurve Title
plotTotcatch Title

-- Q --

qtback Title

-- R --

read.bootfiles Title
read.datfile Title
read.fleetname Title
read.grad Title
read.like Title
read.LLrep Title
read.std Title
readLike Title
readSS22 Title
replace.sd.offset Title
rowtapply Title

-- S --

set.mypar Title
setncol Title
shimose08 Title
show.simpleres Title
solv.Feq Title
solve.baranov Title
sstools Functions to read and plot results of SS.
sstools.try What the package does (short line) ~~ package title ~~
sweep2 Title

-- T --

tlist Title
to.num Title
to.quarter Title
to.quarterbase Title
to.yrmonday Title
toshi Title
toshi2 Title
toshi3 Title
try.nofisheffects Title

-- U --

unfactor Title
update.number Title

-- V --

vnumber.ss3 Title

-- W --

watanabe06 Title
write.parameter Title
write.parameter.d Title

-- Y --

y.per.recruits Title
yukinawa.yabuta Title