Package of 'sstools'

Change Log:

• 28 Nov 2013: 1.9 (add various minor improvement, and diagnostics to show effective sample size)
• 25 Oct 2012: 1.7 (Fix a bug when comparing multi CompReport.sso)
• 27 Sep 2012: 1.6 (Several changes)
• 30 April 2012: 1.5 (Fix bugs)
• 10 Jan 2012: 1.4 (For SS-3.23b)
• 19 Dec 2011: 1.3 (plot multiple growth curves when assuming multiple growth morphs, fix malfunction when calculating FAA in the base of multiple growth morph, developed under SS-3.21d)
• 8 Dec 2011: 1.2 (Fix the bug, when length-based maturity is used)
• 6 Dec 2011: 1.1 (Namespace is defined)
• 30 May 2011: 1.0.6 (Minor updates)
• 22 April 2011: 1.0.5 (change appearance and add length diagnostics)
• 12 April 2011: 1.0.4 (corresponding to SS3.2)
• 8 April 2011: 1.0.3 (minor update from 1.0.2)
  • Some features are improved, but there are no large updates.
• 27th March 2011: 1.0.2 (minor update from 1.0.1)
  • Largely reduce calculation time when over-plotting length fits with multiple repfiles.
  • Make bubble plot bigger.
  • Add a figure on F at age by years.
• 29th Dec 2010: Replace 1.0 with 1.0.1 (remove some bugs in 1.0)
• 17th Dec 2010: Add binary zip package for Windows XP

Download and Install:

[source code] sstools_1.9.tar.gz

• Install the 'tar.gz' ball from command line such as '> R CMD INSTALL sstools_X.X.X.tar.gz'

• GO to menu -> package -> Install zip file in local directory -> Select the zip file

Usage: See help after calling the library of 'sstools' such as

 
library(sstools)  
help(sstools)
 

Examples:

library(sstools)
# No options
allplot()

# overplots of multiple results
allplot(repfile=c("Report1.SSO","Report2.SSO","Report3.SSO"),
        compfiles=c("CompReport1.SSO","CompReport2.SSO","CompReport3.SSO"))

NOTEs when over-plotting multiple results:

• Only single bubble plot of length residuals is produced from the firstly specified repfile, even though multiple repfiles are specified. (複数のrepfileを指定しても、bubble plotの出力は、最初のrepfileのみ。)
• If overplotting results with different time period, please specify the repfile with longest time period for the first time. If not, the allplot can't work. (資源評価期間が異なる結果を重ね書きする場合は、一番長い時系列を一番最初に持ってくること。)
• It is difficult to overplot multiple repfiles with different 'defined fisheries', and 'future projection settings', where different number of selectivity curves are estimated in SS. (異なる漁業定義、将来予測の設定等を含むrepfileを一緒に重ね書きするのは困難（selectivityのプロットで止まる）)

Past packages:

• sstools_1.6.tar.gz, sstools_1.7.zip: developed under SS-3.23b
• sstools_1.6.tar.gz, sstools_1.6.zip: developed under SS-3.23b
• sstools_1.5.tar.gz, sstools_1.5.zip: developed under SS-3.23b
• sstools_1.4.tar.gz, sstools_1.4.zip: developed under SS-3.23b
• sstools_1.3.tar.gz, sstools_1.3.zip: developed under SS-3.21d
• sstools_1.2.tar.gz, sstools_1.2.zip: developed under SS-3.10b
• sstools_1.1.tar.gz, sstools_1.1.zip: developed under SS-3.10b
• sstools_1.0.6.tar.gz, sstools_1.0.6.zip: developed under SS-3.10b
• sstools_1.0.5.tar.gz, sstools_1.0.5.zip: developed under SS-3.10b
• sstools_1.0.4.tar.gz, sstools_1.0.4.zip: developed under SS-3.10b
• sstools_1.0.3.tar.gz, sstools_1.0.3.zip: developed under SS-3.10b
• sstools_1.0.2.tar.gz, sstools_1.0.2.zip: developed under SS-3.10b
• sstools_1.0.1.tar.gz, sstools_1.0.1.zip: developed under SS-3.10b

Snapshots